Examples
========

This section provides practical examples demonstrating how to use OCDocker for various tasks.
All examples are located in the ``examples/`` directory of the OCDocker repository.

.. toctree::
   :maxdepth: 2
   :caption: Example Scripts:

   examples/cli_examples
   examples/python_api_examples
   examples/ocscore_pipeline

CLI Examples
------------

Command-line interface examples for basic docking operations and multi-engine pipelines.

.. toctree::
   :maxdepth: 1

   examples/cli_examples

Python API Examples
-------------------

Python API examples demonstrating programmatic usage of OCDocker modules.

.. toctree::
   :maxdepth: 1

   examples/python_api_examples

OCScore Pipeline
----------------

Complete end-to-end pipeline examples for training and using OCScore models.

.. toctree::
   :maxdepth: 1

   examples/ocscore_pipeline